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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046625
species:
Brassica rapa
source:
microPC, original name:
miR160
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCC
miRNA*
CGTATGAGGAGCCAAGCA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGCCTGGCTCCCTGTATGCC
ATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGG
CGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..(((((((
((.(((..((.((..((.....))..)).))..))).))))
)))))..))))))).)).
SIMILARITIES
miRBase
bra-MIR160a
:
0.000000000000001
PMRD
bra-miR160a
:
0.000000000000001
microPC
miR160
:
1e-39
UniProt
no hits
RFAM
mir-160: 0.000000000004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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