ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR1536
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCAGAGACAAATGTGTTTA miRNA* TCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTAT mismatches: 5 bulges: 19 |
pre-miRNA
GAGAGGATAGCAATATTGTCTCTGCTTTAATTTATCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTATTGTGCCATATTCCCAAGAGATTTACA
TATGTTTGTAAGAGAGCTTTTAATTTTGTTGTGAATGGCTGAAAATTTTATACAATGCCCTCATGAGAGTATTTAGATGATATATTATGTGGGTATGTTG
TTAAACAATCAAGCAGAGACAAATGTGTTTAGTCATGCATG
dot-bracket secondary structure
((((.((((....)))).)))).((......(((....((((((......(((((....)))))((((((((((((((((((..((.(((.(((.(((..
...((((......))))...))).))).))).)))))))...............((((((.(((((..(((((.....))))).))))).))))))....
....))))).))))))))...))))))..)))....))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
GAGAGGATAGCAATATTGTCTCTGCTTTAATTTATCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTATTGTGCCATATTCCCAAGAGATTTACA
TATGTTTGTAAGAGAGCTTTTAATTTTGTTGTGAATGGCTGAAAATTTTATACAATGCCCTCATGAGAGTATTTAGATGATATATTATGTGGGTATGTTG
TTAAACAATCAAGCAGAGACAAATGTGTTTAGTCATGCATG
dot-bracket secondary structure
((((.((((....)))).)))).((......(((....((((((......(((((....)))))((((((((((((((((((..((.(((.(((.(((..
...((((......))))...))).))).))).)))))))...............((((((.(((((..(((((.....))))).))))).))))))....
....))))).))))))))...))))))..)))....))...
SIMILARITIES| miRBase gma-MIR1536: 1e-135 PMRD no hits microPC no hits | UniProt sp|Q9LRR4|R13L1_ARATH: 0.00000005 RFAM no hits |
Identical with: gma-MIR1536 from miRBase (MNEST040535) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
