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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048623
species: Glycine max
source: PMRD, original name: gma-miR1536

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCAGAGACAAATGTGTTTA

miRNA*
 TCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTAT

mismatches: 5
bulges: 19
View larger
pre-miRNA
 GAGAGGATAGCAATATTGTCTCTGCTTTAATTTATCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTATTGTGCCATATTCCCAAGAGATTTACA
TATGTTTGTAAGAGAGCTTTTAATTTTGTTGTGAATGGCTGAAAATTTTATACAATGCCCTCATGAGAGTATTTAGATGATATATTATGTGGGTATGTTG
TTAAACAATCAAGCAGAGACAAATGTGTTTAGTCATGCATG

dot-bracket secondary structure
((((.((((....)))).)))).((......(((....((((((......(((((....)))))((((((((((((((((((..((.(((.(((.(((..
...((((......))))...))).))).))).)))))))...............((((((.(((((..(((((.....))))).))))).))))))....
....))))).))))))))...))))))..)))....))...


SIMILARITIES
miRBase gma-MIR1536: 1e-135

PMRD no hits

microPC no hits		UniProt sp|Q9LRR4|R13L1_ARATH: 0.00000005

RFAM no hits

Identical with: gma-MIR1536 from miRBase (MNEST040535)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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