miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST048623
species: Glycine max
source: PMRD, original name: gma-miR1536

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCAGAGACAAATGTGTTTA

miRNA*
 TCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTAT

mismatches: 5
bulges: 19
View larger
pre-miRNA
 GAGAGGATAGCAATATTGTCTCTGCTTTAATTTATCACCACATTCCTTCTCATCTCAAGAGATGCTTTGCTTATTGTGCCATATTCCCAAGAGATTTACA
TATGTTTGTAAGAGAGCTTTTAATTTTGTTGTGAATGGCTGAAAATTTTATACAATGCCCTCATGAGAGTATTTAGATGATATATTATGTGGGTATGTTG
TTAAACAATCAAGCAGAGACAAATGTGTTTAGTCATGCATG

dot-bracket secondary structure
((((.((((....)))).)))).((......(((....((((((......(((((....)))))((((((((((((((((((..((.(((.(((.(((..
...((((......))))...))).))).))).)))))))...............((((((.(((((..(((((.....))))).))))).))))))....
....))))).))))))))...))))))..)))....))...


SIMILARITIES
miRBase gma-MIR1536: 1e-135

PMRD no hits

microPC no hits		UniProt sp|Q9LRR4|R13L1_ARATH: 0.00000005

RFAM no hits

Identical with: gma-MIR1536 from miRBase (MNEST040535)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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