ABOUT THIS RECORDspecies: Nicotiana benthamiana
source: PMRD, original name: nbe-miR156a
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCAGTGGATTGATTATCCCATCCTCGATCA mismatches: 13 bulges: 19 |
pre-miRNA
TGACAGAAGAGAGAGAGCACCATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAACT
GAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGACGCAGTGGATTGATTATCCCATCCTC
GATCA
dot-bracket secondary structure
........((..(((.((....(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.((
((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......)).(.((((.....)))))...)))
..)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGACAGAAGAGAGAGAGCACCATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAACT
GAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGACGCAGTGGATTGATTATCCCATCCTC
GATCA
dot-bracket secondary structure
........((..(((.((....(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.((
((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......)).(.((((.....)))))...)))
..)).
SIMILARITIES| miRBase zma-MIR156j: 0.0006 PMRD nbe-miR157b: 3e-114 microPC miR157: 0.0006 | UniProt no hits RFAM no hits |
Identical with: nbe-miR157b from PMRD (MNEST048787) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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