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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST048784
species:
Nicotiana benthamiana
source:
PMRD, original name:
nbe-miR156a
Taxonomy by NCBI:
Nicotiana benthamiana
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCAGTGGATTGATTATCCCATCCTCGATCA
mismatches:
13
bulges:
19
View larger
pre-miRNA
TGACAGAAGAGAGAGAGCAC
CATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAACT
GAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGAC
GCAGTGGATTGATTATCCCATCCTC
GATCA
dot-bracket secondary structure
........((..(((.((..
..(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.((
((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......
)).(.((((.....)))))...)))
..)).
SIMILARITIES
miRBase
zma-MIR156j
:
0.0006
PMRD
nbe-miR157b
:
3e-114
microPC
miR157
:
0.0006
UniProt
no hits
RFAM
no hits
Identical with:
nbe-miR157b
from PMRD (
MNEST048787
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record