ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIR157
source: PMRD, original name: nbe-miR157b
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAGAGAGAGCAC miRNA* GCAGTGGATTGATTATCCCATCCTCGATCAG mismatches: 14 bulges: 19 |
pre-miRNA
TTGACAGAAGAGAGAGAGCACCATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAAC
TGAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGACGCAGTGGATTGATTATCCCATCCT
CGATCAG
dot-bracket secondary structure
.........((..(((.((....(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.(
(((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......)).(.((((.....)))))...))
)..))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
TTGACAGAAGAGAGAGAGCACCATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAAC
TGAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGACGCAGTGGATTGATTATCCCATCCT
CGATCAG
dot-bracket secondary structure
.........((..(((.((....(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.(
(((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......)).(.((((.....)))))...))
)..))..
SIMILARITIES| miRBase far-MIR529: 0.0002 PMRD nbe-miR156a: 3e-114 microPC miR157: 0.0002 | UniProt no hits RFAM no hits |
Identical with: nbe-miR156a from PMRD (MNEST048784) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
