miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048787
species: Nicotiana benthamiana
miRNA family: MIR157
source: PMRD, original name: nbe-miR157b

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GCAGTGGATTGATTATCCCATCCTCGATCAG

mismatches: 14
bulges: 19
View larger
pre-miRNA
 TTGACAGAAGAGAGAGAGCACCATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAAC
TGAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGACGCAGTGGATTGATTATCCCATCCT
CGATCAG

dot-bracket secondary structure
.........((..(((.((....(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.(
(((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......)).(.((((.....)))))...))
)..))..


SIMILARITIES
miRBase far-MIR529: 0.0002

PMRD nbe-miR156a: 3e-114

microPC miR157: 0.0002		UniProt no hits

RFAM no hits

Identical with: nbe-miR156a from PMRD (MNEST048784)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record




Liczniki na strone;