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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048787
species: Nicotiana benthamiana
miRNA family: MIR157
source: PMRD, original name: nbe-miR157b

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GCAGTGGATTGATTATCCCATCCTCGATCAG

mismatches: 14
bulges: 19
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pre-miRNA
 TTGACAGAAGAGAGAGAGCACCATTGGAATCTGAGACTCCAGAGAAGCAGTTTCCGGAAGGAATAATACCAGGACCAGAATAATTGGCACCCCTAGCAAC
TGAACCTTGCAGAACAAGGTCGGATGTCGGATTTTCAGAACTGTTCAGCCAATGACTTTGGAGAAGCTTCCCTGACGCAGTGGATTGATTATCCCATCCT
CGATCAG

dot-bracket secondary structure
.........((..(((.((....(((((.((...)).))))).(((((...((((....))))...........(((((...((((((....(..(((.(
(((.(((((.....))))))))).)))..).......((.....)).))))))...)))))....)))))......)).(.((((.....)))))...))
)..))..


SIMILARITIES
miRBase far-MIR529: 0.0002

PMRD nbe-miR156a: 3e-114

microPC miR157: 0.0002		UniProt no hits

RFAM no hits

Identical with: nbe-miR156a from PMRD (MNEST048784)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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