ABOUT THIS RECORDspecies: Solanum lycopersicum
source: PMRD, original name: sly-miR157c
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAT miRNA* GCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGA mismatches: 6 bulges: 65 |
pre-miRNA
CGGCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGAAGGTCACAAATAACAATTTGCTTAGAAATCCGGG
AATTGACAGAAGATAGAGAGCAT
dot-bracket secondary structure
..((((..((((((((.(((((((((.....)))))).....((((((((.....))).)))))..))).)).......((((((.(..(....)..).)
)))))..))))))....))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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CGGCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGAAGGTCACAAATAACAATTTGCTTAGAAATCCGGG
AATTGACAGAAGATAGAGAGCAT
dot-bracket secondary structure
..((((..((((((((.(((((((((.....)))))).....((((((((.....))).)))))..))).)).......((((((.(..(....)..).)
)))))..))))))....))))..
SIMILARITIES| miRBase gma-MIR156g: 0.00009 PMRD sly-miR157b: 0.00009 microPC miR157: 0.0004 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
download this record
