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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum pennellii
ABOUT THIS RECORD
ID:
MNEST054537
species:
Solanum lycopersicum
source:
PMRD, original name:
sly-miR157c
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAT
miRNA*
GCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGA
mismatches:
6
bulges:
65
View larger
pre-miRNA
CG
GCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGA
AGGTCACAAATAACAATTTGCTTAGAAATCCGGG
AA
TTGACAGAAGATAGAGAGCAT
dot-bracket secondary structure
..
((((..((((((((.(((((((((.....)))))).....((((((((.....))).)))))..
))).)).......((((((.(..(....)..).)
))
)))..))))))....))))..
SIMILARITIES
miRBase
gma-MIR156g
:
0.00009
PMRD
sly-miR157b
:
0.00009
microPC
miR157
:
0.0004
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
degradome data
download this record