miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Antirrhinum majus
,
Coffea canephora
,
Fraxinus excelsior
,
Ipomoea batatas
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Capsicum annuum
,
Catharanthus roseus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST054537
species:
Solanum lycopersicum
source:
PMRD, original name:
sly-miR157c
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAT
miRNA*
GCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGA
mismatches:
6
bulges:
65
View larger
pre-miRNA
CG
GCTTATTCTTTTTGTCCTTCCCTTTACACAAGGGAAATGAAAGTACTATTAGCTAGATACTTGA
AGGTCACAAATAACAATTTGCTTAGAAATCCGGG
AA
TTGACAGAAGATAGAGAGCAT
dot-bracket secondary structure
..
((((..((((((((.(((((((((.....)))))).....((((((((.....))).)))))..
))).)).......((((((.(..(....)..).)
))
)))..))))))....))))..
SIMILARITIES
miRBase
gma-MIR156g
:
0.00009
PMRD
sly-miR157b
:
0.00009
microPC
miR157
:
0.0004
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
degradome data
download this record