ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR319b
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGAGTGAAGGGAGCTCCA miRNA* CAGCTCTTCCAAGA mismatches: 2 bulges: 6 |
pre-miRNA
TGAAGCAGCTCTTCCAAGAGACCGCTGTTCCTTGGCGACACACACTCCGACTTCACTGACGGAGTTGCTGTCGGAGACTGAAGGTAGGGATCAACCAACT
CCGTAGGCTGCATCGCAGGAGCCACGGTATACTTGAGCCAGCTATTCGGATCAGATTCGGTATCTTGGAGTGAAGGGAGCTCCA
dot-bracket secondary structure
....(.(((((((((((((.(((((((.(((....(((((((.((((((.(......).)))))))).))))).........(((.((..((((......
((((.((((.(......).)))))))).....)))).)).)))....))).)))...)))).)))))))......)))))).).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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TGAAGCAGCTCTTCCAAGAGACCGCTGTTCCTTGGCGACACACACTCCGACTTCACTGACGGAGTTGCTGTCGGAGACTGAAGGTAGGGATCAACCAACT
CCGTAGGCTGCATCGCAGGAGCCACGGTATACTTGAGCCAGCTATTCGGATCAGATTCGGTATCTTGGAGTGAAGGGAGCTCCA
dot-bracket secondary structure
....(.(((((((((((((.(((((((.(((....(((((((.((((((.(......).)))))))).))))).........(((.((..((((......
((((.((((.(......).)))))))).....)))).)).)))....))).)))...)))).)))))))......)))))).).
SIMILARITIES| miRBase gma-MIR159b: 0.0006 PMRD sof-miR319c: 6e-47 microPC miR159: 0.0006 | UniProt sp|Q0JIC2|GAM1_ORYSJ: 6e-27 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
download this record
