miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST054687
species:
Triticum aestivum
source:
PMRD, original name:
tae-miR319b
Taxonomy by NCBI:
Triticum aestivum
Triticum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGAGTGAAGGGAGCTCCA
miRNA*
CAGCTCTTCCAAGA
mismatches:
2
bulges:
6
View larger
pre-miRNA
TGAAG
CAGCTCTTCCAAGA
GACCGCTGTTCCTTGGCGACACACACTCCGACTTCACTGACGGAGTTGCTGTCGGAGACTGAAGGTAGGGATCAACCAACT
CCGTAGGCTGCATCGCAGGAGCCACGGTATACTTGAGCCAGCTATTCGGATCAGATTCGGTATC
TTGGAGTGAAGGGAGCTCCA
dot-bracket secondary structure
....(
.(((((((((((((
.(((((((.(((....(((((((.((((((.(......).)))))))).))))).........(((.((..((((......
((((.((((.(......).)))))))).....)))).)).)))....))).)))...)))).))
)))))......)))))).).
SIMILARITIES
miRBase
gma-MIR159b
:
0.0006
PMRD
sof-miR319c
:
6e-47
microPC
miR159
:
0.0006
UniProt
sp|Q0JIC2|GAM1_ORYSJ: 6e-27
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
degradome data
download this record