miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008500
species: Sorghum bicolor
miRNA family: MIRf37
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCGGTTCGGTTCGGTTCGG

miRNA*
 GGATCCCAGCCCAGCCCGGCCC

mismatches: 3
bulges: 1
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pre-miRNA
 CGTCCAGTACCAGTAGTAGCACGTACGTACCTGATTGATTGATTGATTGATTGGATCCCAGCCCAGCCCGGCCCAGCCCGCAATTGGAGTGGAATCCGGC
TCGGTTCGGTTCGGTTCGGTCATCATCATCACTACGTACGTACTATACGCTACTACCACTAGACGACT

dot-bracket secondary structure
((((.(((....((((((((..((((((((.((..((((.(((.(((.(((((((.((.((((.((((.((((....((((.......)))).....)))
).)))).)))).))))))))))))))))))).)).)))))))).....)))))))).))).))))...


SIMILARITIES
miRBase tgu-mir-2974: 0.000008

PMRD ptc-miRf12398-akr: 0.0005

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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