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Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST008500
species:
Sorghum bicolor
miRNA family:
MIRf37
source:
miRNEST
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCTCGGTTCGGTTCGGTTCGG
miRNA*
GGATCCCAGCCCAGCCCGGCCC
mismatches:
3
bulges:
1
View larger
pre-miRNA
CGTCCAGTACCAGTAGTAGCACGTACGTACCTGATTGATTGATTGATTGATT
GGATCCCAGCCCAGCCCGGCCC
AGCCCGCAATTGGAGTGGAATCCG
GC
TCGGTTCGGTTCGGTTCGG
TCATCATCATCACTACGTACGTACTATACGCTACTACCACTAGACGACT
dot-bracket secondary structure
((((.(((....((((((((..((((((((.((..((((.(((.(((.((((
(((.((.((((.((((.((((.
...((((.......)))).....)
))
).)))).)))).)))))))
)))))))))))).)).)))))))).....)))))))).))).))))...
SIMILARITIES
miRBase
tgu-mir-2974
:
0.000008
PMRD
ptc-miRf12398-akr
:
0.0005
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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