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Species belonging to selected taxon:
Avena barbata
,
Avena sativa
ABOUT THIS RECORD
ID:
MNEST000187
species:
Avena barbata
miRNA family:
MIRf1372
source:
miRNEST
Taxonomy by NCBI:
Avena barbata
Avena
Aveninae
Poeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCGAGCTTCTCGAAAATGTCG
miRNA*
GCGTGCTTGGGGAGCTCCCCT
mismatches:
4
bulges:
0
View larger
pre-miRNA
CCTCGGAAACA
GCGTGCTTGGGGAGCTCCCCT
GGGAGGACAAGGCGTACGGAGGTCTGGATCTCCCGGGAGGGGATGGGGGGCTTCTTGTTGTAGCGGGC
CAGCTTGGCGGACTCCCCG
GCGAGCTTCTCGAAAATGTCG
TTGATGAA
dot-bracket secondary structure
..(((..(((.
((((..(((((((((((.((.
(((((......((..((((((((((...((((((.....)))).)).))))))).)))....))..((
((...))))...))))).)
).)))))))))))..)))).)
))..))).
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10132-akr
:
5e-50
microPC
no hits
UniProt
sp|Q7GBK0|H2B7_ORYSJ: 3e-18
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record