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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST000187
species:
Avena barbata
miRNA family:
MIRf1372
source:
miRNEST
Taxonomy by NCBI:
Avena barbata
Avena
Aveninae
Poeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCGAGCTTCTCGAAAATGTCG
miRNA*
GCGTGCTTGGGGAGCTCCCCT
mismatches:
4
bulges:
0
View larger
pre-miRNA
CCTCGGAAACA
GCGTGCTTGGGGAGCTCCCCT
GGGAGGACAAGGCGTACGGAGGTCTGGATCTCCCGGGAGGGGATGGGGGGCTTCTTGTTGTAGCGGGC
CAGCTTGGCGGACTCCCCG
GCGAGCTTCTCGAAAATGTCG
TTGATGAA
dot-bracket secondary structure
..(((..(((.
((((..(((((((((((.((.
(((((......((..((((((((((...((((((.....)))).)).))))))).)))....))..((
((...))))...))))).)
).)))))))))))..)))).)
))..))).
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10132-akr
:
5e-50
microPC
no hits
UniProt
sp|Q7GBK0|H2B7_ORYSJ: 3e-18
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record