miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Branchiostoma floridae
ABOUT THIS RECORD
ID:
MNEST024663
species:
Branchiostoma floridae
miRNA family:
mir-34
source:
miRBase, original name:
bfl-mir-34d
(
MI0017678
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGCAGTGTGCGCCTACAGCTGA
miRNA*
ACTGTACACACTCCCAGC
mismatches:
2
bulges:
5
View larger
pre-miRNA
CCAGCCCGCCAGTT
TGGCAGTGTGCGCCTACAGCTGA
CCCGGTATGACCTCACGGGCC
ACTGTACACACTCCCAGC
CGGGCGGGTCAA
dot-bracket secondary structure
...(((((((.(.(
(((.((((((....(((((.((.
((((...........)))).)
)))))))))))).)))).
).)))))))...
SIMILARITIES
miRBase
bfl-mir-34e
:
6e-39
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M,
Evol Dev. 13:15-27(2011).
,
"microRNA complements in deuterostomes: origin and evolution of microRNAs"