ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169
source: miRBase, original name: bna-MIR169f (MI0006462)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTATC mismatches: 0 bulges: 2 |
pre-miRNA
GTCAAAGATGAATAGGAGAATTCTATTTGGTAGCCAAGGATGACTTGCCTACTTCTTTGCGAAGGAAAATGGTCACGGTGTCATGTTTGAAAGTGAATAT
ATATTTATAAGAGTATATCAATTAGTGACCATTTTGCGTATAAAAAGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCTCATCTCAGA
C
dot-bracket secondary structure
(((..((((((..((((((((..(((..((((((((((((.((((.(((((..(((((.....(.(((((((((((....((((........))))..((
((((((....))))))))......))))))))))).)......)))))...))))))))))))))))))).))..))).))))))))...))))))..))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GTCAAAGATGAATAGGAGAATTCTATTTGGTAGCCAAGGATGACTTGCCTACTTCTTTGCGAAGGAAAATGGTCACGGTGTCATGTTTGAAAGTGAATAT
ATATTTATAAGAGTATATCAATTAGTGACCATTTTGCGTATAAAAAGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCTCATCTCAGA
C
dot-bracket secondary structure
(((..((((((..((((((((..(((..((((((((((((.((((.(((((..(((((.....(.(((((((((((....((((........))))..((
((((((....))))))))......))))))))))).)......)))))...))))))))))))))))))).))..))).))))))))...))))))..))
)
SIMILARITIES| miRBase bna-MIR169d: 9e-105 PMRD bna-miR169f: 6e-112 microPC miR169: 0.00001 | UniProt no hits RFAM MIR169_5: 9e-19 |
Identical with: bna-miR169f from PMRD (MNEST048355) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
