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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040277
species: Brassica napus
miRNA family: MIR169
source: miRBase, original name: bna-MIR169f (MI0006462)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTA

miRNA*
 GGCAGTCTCCTTGGCTATC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 GTCAAAGATGAATAGGAGAATTCTATTTGGTAGCCAAGGATGACTTGCCTACTTCTTTGCGAAGGAAAATGGTCACGGTGTCATGTTTGAAAGTGAATAT
ATATTTATAAGAGTATATCAATTAGTGACCATTTTGCGTATAAAAAGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCTCATCTCAGA
C

dot-bracket secondary structure
(((..((((((..((((((((..(((..((((((((((((.((((.(((((..(((((.....(.(((((((((((....((((........))))..((
((((((....))))))))......))))))))))).)......)))))...))))))))))))))))))).))..))).))))))))...))))))..))
)


SIMILARITIES
miRBase bna-MIR169d: 9e-105

PMRD bna-miR169f: 6e-112

microPC miR169: 0.00001		UniProt no hits

RFAM MIR169_5: 9e-19

Identical with: bna-miR169f from PMRD (MNEST048355)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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