miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002333
species: Raphanus raphanistrum
miRNA family: MIRf258
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCTTCCAAAACGCCGTCGTA

miRNA*
TGGTGGTGGTGGGGGGTGA

mismatches: 4
bulges: 2

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pre-miRNA
TTCTCAGACCAAGCTTCCAAAACGCCGTCGTAGTCAAGCTTCAACATCAGCTCTCGTTGTCGTTGAGCTTGACGGTGGTGGTGGTGGGGGGTGATTTCAT
TT


dot-bracket secondary structure
.............((((((...(((((((((.((((((((.((((..((((....))))..)))))))))))).))))))))).)))))).((....)).
..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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