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Species belonging to selected taxon:
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
ABOUT THIS RECORD
ID:
MNEST002333
species:
Raphanus raphanistrum
miRNA family:
MIRf258
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCTTCCAAAACGCCGTCGTA
miRNA*
TGGTGGTGGTGGGGGGTGA
mismatches:
4
bulges:
2
View larger
pre-miRNA
TTCTCAGACCA
AGCTTCCAAAACGCCGTCGTA
GTCAAGCTTCAACATCAGCTCTCGTTGTCGTTGAGCTTGACGG
TGGTGGTGGTGGGGGGTGA
TTTCAT
TT
dot-bracket secondary structure
...........
..((((((...(((((((((.
((((((((.((((..((((....))))..)))))))))))).)
)))))))).)))))).((.
...)).
..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record