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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST045978
species: Brassica rapa
source: microPC, original name: miR156

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTATACTTCTG

mismatches: 0
bulges: 1
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pre-miRNA
 CAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATACATATATATCATCACACCGCAAGTGGATATAAGGAAATTCAAGAAAGAGAGGAAAAAAGA
GCCTGCATCTCTACTCTTTTGTGCTCTCTATACTTCTG

dot-bracket secondary structure
(((((((((((((((((.(((((.((.(((((.((.(.......((((((..(((.......)))))))))......(((......))).........).
)).))))).))...))))).))))))))))).))))))


SIMILARITIES
miRBase bna-MIR156c: 6e-34

PMRD bna-miR156c: 6e-34

microPC miR157: 2e-74		UniProt no hits

RFAM no hits

Identical with: miR157 from microPC (MNEST046632)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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