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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002718
species: Theobroma cacao
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGAGGGATGCCTTCCTTG

miRNA*
GGGGGGGCTCCTTCTGAATG

mismatches: 3
bulges: 1

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pre-miRNA
GGACCAGATGGAGGGGGGGCTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGG
AGGGATGCCTTCCTTG
TCCTGGATC


dot-bracket secondary structure
...(((...(((((((((((((((((((.((..((..(((((((.......))))((((((..((((.....))))))))))..)))..))...)).)))
))))).))))))))..
))))))...



SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.000000002

microPC no hits
UniProt sp|Q9FHQ6|UBQ9_ARATH: 0.000000000000002

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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