miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002718
species: Theobroma cacao
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGGAGGGATGCCTTCCTTG

miRNA*
 GGGGGGGCTCCTTCTGAATG

mismatches: 3
bulges: 1
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pre-miRNA
 GGACCAGATGGAGGGGGGGCTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGG
AGGGATGCCTTCCTTGTCCTGGATC

dot-bracket secondary structure
...(((...(((((((((((((((((((.((..((..(((((((.......))))((((((..((((.....))))))))))..)))..))...)).)))
))))).))))))))..))))))...


SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.000000002

microPC no hits		UniProt sp|Q9FHQ6|UBQ9_ARATH: 0.000000000000002

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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