miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001323
species: Lactuca sativa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTTGTCCTAGGCTACA

mismatches: 2
bulges: 0
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pre-miRNA
 TATGTGTAGTGCAGCCAAGGATGACTTGCCGGAGATATTCTTAGGTCTTTGTTTATCCATCTTTGAGTTCTTTTTCTATTTCTTAAAACCCCCCAAAAAA
ATCATACTCAAAAGGTCACGAAGGCACGCATTTGAAAATTTATATATCACCCATTAATCGTAAAGTTTATTAAAGATTCATAAGCTCCGGTTGGTTAACT
GCATAAACTATTTATTGGCCTGTTTCGTTATTTTCGTGTATACGTACATAGGATAAGAAAGAAAGCATAACGTCGGCAAGTTGTCCTAGGCTACATATCT
ATC

dot-bracket secondary structure
........(((.((((.(((((((((((((((...(((.(((...(((((.(((((((...(((((((...((((......................)))
)....))))))).(((.((((((.((.((...((((..(((((.((......((((((((...(((((((.((...)).))))))).))))))))....)
).)))))...))))...)).)))))))).)))...(((((....))))).))))))))))))))).)))...))))))))))))))).)))).)))....
...


SIMILARITIES
miRBase vvi-MIR169c: 0.00000006

PMRD vvi-miR169c: 0.00000006

microPC miR169: 0.0002		UniProt no hits

RFAM MIR169_2: 0.00000008		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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