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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001323
species: Lactuca sativa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTTGTCCTAGGCTACA

mismatches: 2
bulges: 0
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pre-miRNA
 TATGTGTAGTGCAGCCAAGGATGACTTGCCGGAGATATTCTTAGGTCTTTGTTTATCCATCTTTGAGTTCTTTTTCTATTTCTTAAAACCCCCCAAAAAA
ATCATACTCAAAAGGTCACGAAGGCACGCATTTGAAAATTTATATATCACCCATTAATCGTAAAGTTTATTAAAGATTCATAAGCTCCGGTTGGTTAACT
GCATAAACTATTTATTGGCCTGTTTCGTTATTTTCGTGTATACGTACATAGGATAAGAAAGAAAGCATAACGTCGGCAAGTTGTCCTAGGCTACATATCT
ATC

dot-bracket secondary structure
........(((.((((.(((((((((((((((...(((.(((...(((((.(((((((...(((((((...((((......................)))
)....))))))).(((.((((((.((.((...((((..(((((.((......((((((((...(((((((.((...)).))))))).))))))))....)
).)))))...))))...)).)))))))).)))...(((((....))))).))))))))))))))).)))...))))))))))))))).)))).)))....
...


SIMILARITIES
miRBase vvi-MIR169c: 0.00000006

PMRD vvi-miR169c: 0.00000006

microPC miR169: 0.0002		UniProt no hits

RFAM MIR169_2: 0.00000008		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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