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Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST045213
species: Lactuca saligna
source: microPC, original name: miR398

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCTT

miRNA*
 GGAGTGACACTAAGAACACACA

mismatches: 3
bulges: 1
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pre-miRNA
 AGGAGTGACACTAAGAACACACATGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTACAAATTTTCGATGCACATACAGTTGTTTGTGA
GACATTGTCTACCATCCATTTGTGTTCTCAGGTCACCCCTT

dot-bracket secondary structure
(((.(((((.((.((((((((.((((.((..(((.((.((..((.(((((....))))).))..))))))).....(((((((((.((....)).)))).
..))))).....)).)))).)))))))).))))))).))).


SIMILARITIES
miRBase aqc-MIR398a: 0.0000004

PMRD aqc-miR398a: 0.0000004

microPC miR398: 1e-75		UniProt no hits

RFAM MIR398: 0.0001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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