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Species belonging to selected taxon:
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
ABOUT THIS RECORD
ID:
MNEST045213
species:
Lactuca saligna
source:
microPC, original name:
miR398
Taxonomy by NCBI:
Lactuca saligna
Lactuca
Lactucinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCTT
miRNA*
GGAGTGACACTAAGAACACACA
mismatches:
3
bulges:
1
View larger
pre-miRNA
A
GGAGTGACACTAAGAACACACA
TGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTACAAATTTTCGATGCACATACAGTTGTTTGTGA
GACATTGTCTACCATCCATT
TGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
(
((.(((((.((.((((((((.(
(((.((..(((.((.((..((.(((((....))))).))..))))))).....(((((((((.((....)).)))).
..))))).....)).)))).
)))))))).))))))).))).
SIMILARITIES
miRBase
aqc-MIR398a
:
0.0000004
PMRD
aqc-miR398a
:
0.0000004
microPC
miR398
:
1e-75
UniProt
no hits
RFAM
MIR398: 0.0001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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