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Species belonging to selected taxon:

Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Anopheles stephensi



ABOUT THIS RECORD

ID: MNEST035172
species: Aedes aegypti
miRNA family: mir-9
source: miRBase, original name: aae-mir-9a-1 (MI0013528)

Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATGA

miRNA*
ATAAAGCTAGCATACCGAAGTTA

mismatches: 5
bulges: 0

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pre-miRNA
GTCAAAGTTCTCTTTGGTTATCTAGCTGTATGAGTGAATTTAGAACATCATAAAGCTAGCATACCGAAGTTAATAGTTGAC

dot-bracket secondary structure
(((((.(((..(((((((...((((((.(((((((.........)).))))).))))))...)))))))..)))..)))))


SIMILARITIES
miRBase aae-mir-9a-2: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 1e-18

Identical with: aae-mir-9a-2 from miRBase (MNEST035173)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"




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