miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Drosophila simulans, Glossina morsitans morsitans, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Cochliomyia hominivorax, Anopheles stephensi, Haematobia irritans irritans, Polypedilum vanderplanki, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST035172
species: Aedes aegypti
miRNA family: mir-9
source: miRBase, original name: aae-mir-9a-1 (MI0013528)

Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATGA

miRNA*
ATAAAGCTAGCATACCGAAGTTA

mismatches: 5
bulges: 0

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pre-miRNA
GTCAAAGTTCTCTTTGGTTATCTAGCTGTATGAGTGAATTTAGAACATCATAAAGCTAGCATACCGAAGTTAATAGTTGAC

dot-bracket secondary structure
(((((.(((..(((((((...((((((.(((((((.........)).))))).))))))...)))))))..)))..)))))


SIMILARITIES
miRBase aae-mir-9a-2: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 1e-18

Identical with: aae-mir-9a-2 from miRBase (MNEST035173)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"




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