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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST048677
species:
Lotus japonicus
source:
PMRD, original name:
lja-miR157c
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAT
miRNA*
GCATCCCTGCAATGTGTACGGCATGAGCTTTGGCATGGTACTCACAAACCTTATGCCGCCGGTG
mismatches:
6
bulges:
170
View larger
pre-miRNA
TTGACAGAAGATAGAGAGCAT
CCATGCATAGAGACCAGCAACACTATTTAAAAGGTTTCAATGGGTGACTTTATTAATTCATTTATATGCTTGCCTCAAT
GCCCATCTCATTGATGAAATCATTGTCCATGATAGTCAATTGCATTTTTGCGACGCCTCTCATTATGCCCAGCCAGACGCCTCCTACAACTCCTTTTAGA
GTCATCAAATTCTGATAGCTCATGGAATCTGCTACATTGCTGGCAAAACCGTTGAT
GCATCCCTGCAATGTGTACGGCATGAGCTTTGGCATGGTACTCA
CAAACCTTATGCCGCCGGTG
GTACTGCTTAGCCTCACTTAGATCAGCATCACAATTTTCCACCTGACAAGAAGGTGGCACTGAGCTTCCACCTTTAGACC
CTCTCTTGCTATATAGATCTGTAACTACTCTCTTTCTTCTACCCTCTTCTTCTTCATCTT
dot-bracket secondary structure
.....((((((.(((((((((
(...(((((((((...((...((((((....((((..((((((((((.((....)).)))))))).))...))))((((
(..((((.....))))....))))).....))))))...(((((....))))).)).))))..)))))...(((((..............(((.....((
(..((((.....))))..)))..))).............))))).........)))
)).....((((((.((((..(((.(((....((((((((.....
...)))..)))))...((((
(....((((((.........(((....)))........((((((.......))))))..))))))..)))))........
..))).)))..)))).)).)))).....))))).))))))....................
SIMILARITIES
miRBase
no hits
PMRD
pco-miR157
:
0.0000000001
microPC
no hits
UniProt
sp|Q38741|SBP1_ANTMA: 8e-34
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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