miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048678
species: Lotus japonicus
miRNA family: MIR167
source: PMRD, original name: lja-miR167

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GATCATATGGCAGCTTCACC

mismatches: 1
bulges: 1
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pre-miRNA
 GTTCGTGCACCTGCAATAGTTGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTCACCTGTTGAAT
GGAAGCAT

dot-bracket secondary structure
....((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))).))))))...
))..))))


SIMILARITIES
miRBase lja-MIR167: 1e-56

PMRD gma-miR167n: 0.00000000009

microPC miR167: 5e-34		UniProt no hits

RFAM MIR167_1: 0.00000002

Identical with: miR167 from microPC (MNEST046166)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"



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