miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST048678
species: Lotus japonicus
miRNA family: MIR167
source: PMRD, original name: lja-miR167

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GATCATATGGCAGCTTCACC

mismatches: 1
bulges: 1

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pre-miRNA
GTTCGTGCACCTGCAATAGTTGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTCACCTGTTGAAT
GGAAGCAT

dot-bracket secondary structure
....((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))).))))))...
))..))))

UniProt no hits

RFAM MIR167_1: 0.00000002

Identical with: miR167 from microPC (MNEST046166)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"