ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR167
source: miRBase, original name: gma-MIR167d (MI0010571)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGTGCTAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
AAGGGTCACAAGGGAAAAAGTGAAGCTGCCAGCATGATCTAGCTTTGGTTAGTGGGAGCCAGAGAGTGCTAACCCTCACTAGGTCATGCTGTGCTAGCCT
CACTCCTTCCTATTTGGAGAC
dot-bracket secondary structure
....(((.((((((((..(((((.((((((((((((((((((....(((((((..............)))))))....))))))))))))).)).))).)
))))..)))))..)))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
AAGGGTCACAAGGGAAAAAGTGAAGCTGCCAGCATGATCTAGCTTTGGTTAGTGGGAGCCAGAGAGTGCTAACCCTCACTAGGTCATGCTGTGCTAGCCT
CACTCCTTCCTATTTGGAGAC
dot-bracket secondary structure
....(((.((((((((..(((((.((((((((((((((((((....(((((((..............)))))))....))))))))))))).)).))).)
))))..)))))..)))..)))
SIMILARITIES| miRBase gma-MIR167b: 1e-59 PMRD gma-miR167d: 2e-64 microPC miR167: 5e-22 | UniProt no hits RFAM MIR167_1: 5e-19 |
Identical with: gma-miR167d from PMRD (MNEST048557) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
