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Species belonging to selected taxon:
Glycine soja
,
Glycine max
ABOUT THIS RECORD
ID:
MNEST040444
species:
Glycine max
miRNA family:
MIR167
source:
miRBase, original name:
gma-MIR167d
(
MI0010571
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA
miRNA*
GGTCATGCTGTGCTAGCCTCACT
mismatches:
1
bulges:
2
View larger
pre-miRNA
AAGGGTCACAAGGGAAAAAG
TGAAGCTGCCAGCATGATCTA
GCTTTGGTTAGTGGGAGCCAGAGAGTGCTAACCCTCACTA
GGTCATGCTGTGCTAGCCT
CACT
CCTTCCTATTTGGAGAC
dot-bracket secondary structure
....(((.((((((((..((
(((.(((((((((((((((((
(....(((((((..............)))))))....)))
)))))))))).)).))).)
))))
..)))))..)))..)))
SIMILARITIES
miRBase
gma-MIR167b
:
1e-59
PMRD
gma-miR167d
:
2e-64
microPC
miR167
:
5e-22
UniProt
no hits
RFAM
MIR167_1: 5e-19
Identical with:
gma-miR167d
from PMRD (
MNEST048557
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
cloned
deep sequencing data evidence
references
[
1
] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X,
Biochem Biophys Res Commun. 378:799-803(2009).
,
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"