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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040641
species: Glycine soja
miRNA family: MIR2109
source: miRBase, original name: gso-MIR2109 (MI0015369)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCGAGTGTCTTCGCCTCTGA

miRNA*
GGAGGCGTAGATACTCACACC

mismatches: 2
bulges: 0

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pre-miRNA
AGCCAGTGAAATCGGTGCGAGTGTCTTCGCCTCTGAGAGAGATACTATGAGATCTCAAGCCTCGGAGGCGTAGATACTCACACCTCTTTTTCTGGCT

dot-bracket secondary structure
((((((.((((..((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))..)))).))))))


SIMILARITIES
miRBase gma-MIR2109: 1e-34

PMRD gma-miR2109: 1e-34

microPC no hits
UniProt no hits

RFAM no hits

Identical with: gma-MIR2109 from miRBase (MNEST040539)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




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