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Species belonging to selected taxon:

Glycine soja, Glycine max



ABOUT THIS RECORD

ID: MNEST040641
species: Glycine soja
miRNA family: MIR2109
source: miRBase, original name: gso-MIR2109 (MI0015369)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCGAGTGTCTTCGCCTCTGA

miRNA*
GGAGGCGTAGATACTCACACC

mismatches: 2
bulges: 0

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pre-miRNA
AGCCAGTGAAATCGGTGCGAGTGTCTTCGCCTCTGAGAGAGATACTATGAGATCTCAAGCCTCGGAGGCGTAGATACTCACACCTCTTTTTCTGGCT

dot-bracket secondary structure
((((((.((((..((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))..)))).))))))


SIMILARITIES
miRBase gma-MIR2109: 1e-34

PMRD gma-miR2109: 1e-34

microPC no hits
UniProt no hits

RFAM no hits

Identical with: gma-MIR2109 from miRBase (MNEST040539)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




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