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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040707
species:
Medicago truncatula
miRNA family:
MIR393
source:
miRBase, original name:
mtr-MIR393b
(
MI0005601
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC
miRNA*
TCATGCTATCCCTTTGGATT
mismatches:
1
bulges:
1
View larger
pre-miRNA
AGGCA
TCCAAAGGGATCGCATTGATC
CCAAATCTAATTAAGTCCCTAGCTACTTAATTAACAACTTAATTTCCTTAATATCTCATAATATTTGGGA
TCAT
GCTATCCCTTTGGATT
CAT
dot-bracket secondary structure
.((.(
(((((((((((.((((.((((
((((((.(((((((((........))))))))).....((((.....))))...........))))))))
))))
)).)))))))))))))
)..
SIMILARITIES
miRBase
gma-MIR393
:
0.000000000006
PMRD
mtr-miR393b
:
3e-63
microPC
miR393
:
0.000000002
UniProt
no hits
RFAM
no hits
Identical with:
mtr-miR393b
from PMRD (
MNEST048731
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
Northern
references
[
1
] Bonnet E,
Unpublished (2007).
,
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"