miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST041025
species: Phaseolus vulgaris
miRNA family: MIR166
source: miRBase, original name: pvu-MIR166a (MI0010704)

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 ATCAGTTTCTACTTTCTAATCATCAACTTCTTCAAACACATCATATGAATATAGCTACCTAGGTGCTGTTTTCTTTTCCAACTTCCTCATATCTTGTTCA
TTCCTTGCAAAGGTGAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGAGTTCTCAGATAAACTCTTTCACCCAAAGTTTCCAATGGAA
ATTTACCCTCTAACACCAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACTTTTGCTATTTTCTTTCTCGTAATCTTCATATTTTGCATGCCC
CCATGCTTGTTTTTGCAGGATCAGAATTTTCAACTCACTACCCATCTTCTTTTGTTTTACCTGTAAATATCTTTATAAAGGCCGGTGAAAATTATAGGGA
AGGCAACTTCATAATTTACTTGGGAAAAAGGCTTGCCATCATTTTCATCAACATCTGAATGAATGTACTTCAGTGAAATGACAGTGACGAGTGTTGAAGG
CATGCACTCACTAGCCGCTGAAAGTTGCTGAGAAGCATATGCTAAATGTGAAAGAGTAATGAATGAAAGAAGAGAAGAGAAGAGAAGTGCTGGAACAGTT
AACGAGAAGAAGTGAGAATCAGGAGAAGCTAGCAAGCTAGGGATTCTATGTGTCTGAGTCTGTGACTCTT

dot-bracket secondary structure
...(((((((.(((.....((.(((.(((((((.............(((.(((((.((....))))))).)))..((((((((((.((...((((.....
......((((((((..(((.(.(.((((((..((((((..((((((((((((((.((((((((........))))))))......((((((((...))))
))))..))))).........)))).)))))..))))))..)))))).)).)))..))))))))..(((((((((((((..(((((((((((.((((((..
((.(((........))))).((((((((((((........((((....((....(((((((.((..(((....)))....)).))))))).....)).((
((....))))..........)))).....((((.....(((((.((((...((.(((((.(......))))))))..)))).))))).((((((((....
)).))))))...))))..)))))))).))))...)))..))).))))))).))))...))))..))))))))).))))...)))))))..))))).....
.....))))))))))))...))))))))))....((.((.((((((.........)))))).)).))...


SIMILARITIES
miRBase gma-MIR166b: 5e-35

PMRD pvu-miR166: 2e-77

microPC miR166: 3e-64		UniProt no hits

RFAM mir-166: 0.0000000000002

Identical with: pvu-miR166 from PMRD (MNEST054379)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



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