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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041025
species: Phaseolus vulgaris
miRNA family: MIR166
source: miRBase, original name: pvu-MIR166a (MI0010704)

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 ATCAGTTTCTACTTTCTAATCATCAACTTCTTCAAACACATCATATGAATATAGCTACCTAGGTGCTGTTTTCTTTTCCAACTTCCTCATATCTTGTTCA
TTCCTTGCAAAGGTGAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGAGTTCTCAGATAAACTCTTTCACCCAAAGTTTCCAATGGAA
ATTTACCCTCTAACACCAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACTTTTGCTATTTTCTTTCTCGTAATCTTCATATTTTGCATGCCC
CCATGCTTGTTTTTGCAGGATCAGAATTTTCAACTCACTACCCATCTTCTTTTGTTTTACCTGTAAATATCTTTATAAAGGCCGGTGAAAATTATAGGGA
AGGCAACTTCATAATTTACTTGGGAAAAAGGCTTGCCATCATTTTCATCAACATCTGAATGAATGTACTTCAGTGAAATGACAGTGACGAGTGTTGAAGG
CATGCACTCACTAGCCGCTGAAAGTTGCTGAGAAGCATATGCTAAATGTGAAAGAGTAATGAATGAAAGAAGAGAAGAGAAGAGAAGTGCTGGAACAGTT
AACGAGAAGAAGTGAGAATCAGGAGAAGCTAGCAAGCTAGGGATTCTATGTGTCTGAGTCTGTGACTCTT

dot-bracket secondary structure
...(((((((.(((.....((.(((.(((((((.............(((.(((((.((....))))))).)))..((((((((((.((...((((.....
......((((((((..(((.(.(.((((((..((((((..((((((((((((((.((((((((........))))))))......((((((((...))))
))))..))))).........)))).)))))..))))))..)))))).)).)))..))))))))..(((((((((((((..(((((((((((.((((((..
((.(((........))))).((((((((((((........((((....((....(((((((.((..(((....)))....)).))))))).....)).((
((....))))..........)))).....((((.....(((((.((((...((.(((((.(......))))))))..)))).))))).((((((((....
)).))))))...))))..)))))))).))))...)))..))).))))))).))))...))))..))))))))).))))...)))))))..))))).....
.....))))))))))))...))))))))))....((.((.((((((.........)))))).)).))...


SIMILARITIES
miRBase gma-MIR166b: 5e-35

PMRD pvu-miR166: 2e-77

microPC miR166: 3e-64		UniProt no hits

RFAM mir-166: 0.0000000000002

Identical with: pvu-miR166 from PMRD (MNEST054379)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



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