miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST032021
species: Mus musculus
miRNA family: mir-344
source: miRBase, original name: mmu-mir-344e (MI0014094)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GATATAACCAAAGCCTGACTAT

miRNA*
AGTCAGGCTTCTGGCTATATTCCA

mismatches: 3
bulges: 2

View larger
pre-miRNA
CAGTCAGGCTTCTGGCTATATTCCAGGACTTACCTGGTCCTGGATATAACCAAAGCCTGACTATAT

dot-bracket secondary structure
.((((((((((.(((.(((((.((((((((.....))))))))))))).)))))))))))))....


SIMILARITIES
miRBase rno-mir-344b-1: 1e-17

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-344: 3e-28

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"




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