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Species belonging to selected taxon:
Mus musculus
,
Rattus norvegicus
ABOUT THIS RECORD
ID:
MNEST032021
species:
Mus musculus
miRNA family:
mir-344
source:
miRBase, original name:
mmu-mir-344e
(
MI0014094
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATATAACCAAAGCCTGACTAT
miRNA*
AGTCAGGCTTCTGGCTATATTCCA
mismatches:
3
bulges:
2
View larger
pre-miRNA
C
AGTCAGGCTTCTGGCTATATTCCA
GGACTTACCTGGTCCTG
GATATAACCAAAGCCTGACTAT
AT
dot-bracket secondary structure
.
((((((((((.(((.(((((.(((
(((((.....)))))))
)))))).)))))))))))))..
..
SIMILARITIES
miRBase
rno-mir-344b-1
:
1e-17
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-344: 3e-28
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
deep sequencing data evidence
references
[
1
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"