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Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000878
species: Helianthus petiolaris
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAAGTTTTACTTGGCTACG

mismatches: 4
bulges: 0

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pre-miRNA
TTTGATACATTCATCCATGTTCTTGCATGCGAATACAAGGTATGCATAGTGCAGCCAAGGATGACTTGCCGGTGTACTCATAAATCTATTTTTGGATTCG
TTTTTTTTCTTAAAACCTAAAACACTGCACTCAAAAGGTGATCACCAATAACGCATCCGCTAAATATTAGTTTGTAAACAAACGTTATACAACCATTTCA
AGGGTATTTCGACTGACTTTAGTCATGTTTTCATCCAATTAAAAGTAAATGTAACTTTAATTTATCGGCAAGTTTTACTTGGCTACGATATCTATCTGGT
ACTCACATGCTAGAACTATGGTGAGTTTGAGGAAG


dot-bracket secondary structure
.....((.(((((.(((((((((.(((((.((.(((.(((((...(((.((.(((((((...((((((((((((......((((..(((((.(((((.((
((............((((.................))))..........)))).)))))..)))))...(((((....)))))((((((......(((.(
(.((......(((((((....)))).))).....))..)).))).....))))))))))...))))))))))))...))))))).)).))).))))).))
).)).))))).))))).))))))))).))......



SIMILARITIES
miRBase tcc-MIR169l: 0.0000003

PMRD vvi-miR169k: 0.000001

microPC miR169: 0.00007
UniProt no hits

RFAM MIR169_2: 0.00000008
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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