miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST000878
species: Helianthus petiolaris
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTTTTACTTGGCTACG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 TTTGATACATTCATCCATGTTCTTGCATGCGAATACAAGGTATGCATAGTGCAGCCAAGGATGACTTGCCGGTGTACTCATAAATCTATTTTTGGATTCG
TTTTTTTTCTTAAAACCTAAAACACTGCACTCAAAAGGTGATCACCAATAACGCATCCGCTAAATATTAGTTTGTAAACAAACGTTATACAACCATTTCA
AGGGTATTTCGACTGACTTTAGTCATGTTTTCATCCAATTAAAAGTAAATGTAACTTTAATTTATCGGCAAGTTTTACTTGGCTACGATATCTATCTGGT
ACTCACATGCTAGAACTATGGTGAGTTTGAGGAAG

dot-bracket secondary structure
.....((.(((((.(((((((((.(((((.((.(((.(((((...(((.((.(((((((...((((((((((((......((((..(((((.(((((.((
((............((((.................))))..........)))).)))))..)))))...(((((....)))))((((((......(((.(
(.((......(((((((....)))).))).....))..)).))).....))))))))))...))))))))))))...))))))).)).))).))))).))
).)).))))).))))).))))))))).))......


SIMILARITIES
miRBase tcc-MIR169l: 0.0000003

PMRD vvi-miR169k: 0.000001

microPC miR169: 0.00007		UniProt no hits

RFAM MIR169_2: 0.00000008		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;