miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum



ABOUT THIS RECORD

ID: MNEST001004
species: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATAGTACTCCCTCCGTCCCG

miRNA*
GGAAGGGGGAAGGTATTTTAAC

mismatches: 4
bulges: 1

View larger
pre-miRNA
GAGATGGAGAGCTGATTGTCGTCGATGCTTATATAGTACTCCCTCCGTCCCGGAAATANCTNGNTCTAAGAAATGTTTTGGTTCTAAGAAAATGGTACAA
AAATGGGNNACGTATCTTNCCATTAAACTAAAAAATTAAAAATCTTAGGATTACCATTCNTAATTTTTCTTAAGGAACAAAAGGTATTTTTATTGGAAAC
CAGGAAGGGGGAAGGTATTTTAACCAAAAAAAGGGGAACCTTGGGCCATTTA


dot-bracket secondary structure
.((((((.((((.(((....)))...)))).((.((((((.(((((.(((.((...........(((((((((((((((.((((((((((((...((..(
(..(((.......((((..............................))))..)))))..))..)))))))..)))))..))))))))))..)))))..)
).))).)))))..)))))).)).((.....((((....)))).)))))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record





Liczniki na strone;