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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST001004
species:
Hordeum vulgare
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TATAGTACTCCCTCCGTCCCG
miRNA*
GGAAGGGGGAAGGTATTTTAAC
mismatches:
4
bulges:
1
View larger
pre-miRNA
GAGATGGAGAGCTGATTGTCGTCGATGCTTA
TATAGTACTCCCTCCGTCCCG
GAAATANCTNGNTCTAAGAAATGTTTTGGTTCTAAGAAAATGGTACAA
AAATGGGNNACGTATCTTNCCATTAAACTAAAAAATTAAAAATCTTAGGATTACCATTCNTAATTTTTCTTAAGGAACAAAAGGTATTTTTATTGGAAAC
CA
GGAAGGGGGAAGGTATTTTAAC
CAAAAAAAGGGGAACCTTGGGCCATTTA
dot-bracket secondary structure
.((((((.((((.(((....)))...)))).
((.((((((.(((((.(((.(
(...........(((((((((((((((.((((((((((((...((..(
(..(((.......((((..............................))))..)))))..))..)))))))..)))))..))))))))))..)))))..)
).
))).)))))..)))))).)).(
(.....((((....)))).)))))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record