ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf557
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTCACCATTGCAGGAGGGT miRNA* CATCTTGGTGGTGAGGACT mismatches: 4 bulges: 2 |
pre-miRNA
TAAAAAATGACCTCATCTTTGACCTTGGACGTGGGACCTTTGATGTGTCTCTTCTCACCATTGCAGGAGGGTATCTNTTGAGGTCAAGGCCACAGCTGGT
GACACTCATCTTGGTGGTGAGGACTNTGACAACAGGATGGTCAACCACTTTGTCCAGGAGTTTAAGAGGAAGA
dot-bracket secondary structure
............((.((((.((((((((((((((((((.(((...((((..((((((((((..(((((..........((((((((.(((....)))..)
))).)))))))))))))))))))....)))).)))...))))..))))...))))))).))).)))).))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
TAAAAAATGACCTCATCTTTGACCTTGGACGTGGGACCTTTGATGTGTCTCTTCTCACCATTGCAGGAGGGTATCTNTTGAGGTCAAGGCCACAGCTGGT
GACACTCATCTTGGTGGTGAGGACTNTGACAACAGGATGGTCAACCACTTTGTCCAGGAGTTTAAGAGGAAGA
dot-bracket secondary structure
............((.((((.((((((((((((((((((.(((...((((..((((((((((..(((((..........((((((((.(((....)))..)
))).)))))))))))))))))))....)))).)))...))))..))))...))))))).))).)))).))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P22954|HSP72_ARATH: 3e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
