ABOUT THIS RECORDspecies: Ipomoea batatas
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATCATCATCTTCATCTTCA miRNA* AAGAATGAGAAGATGCGTTC mismatches: 4 bulges: 1 |
pre-miRNA
TCGCCCACCTTATCATTCTCAACATCATCATCTTCATCTTCATCATCACTAGCAGCCTGTCTGCTATAAGTAACAGCGGAATTCCCAGGATTTGTCCGCT
TTAATTCATTAATCGATTCGAAACTACCTTCCGTACATTCCTCGTGCATAATCATCATCTTTTCGGCTACCTCCTCGATGCTTCCATCTCCGACCTCGGT
ATTGAAATCCGAAAGCATGAATTCGTCAAGAATTTCCTCTAAATCATCAATATATACCTGTTCCTTAGATTGAGTGAAGAATGAGAAGATGCGTTCAGAA
AGCTCTTGGGATTT
dot-bracket secondary structure
...((((........((((.(((..((((.((((..(((((((..(((.((((((.....))))))(((.(((.((((((..((....))....))))))
))).....)))...((((.(((......))).((((.......))))..)))).((((.(((((((........((((((((...............)))
)))))...))))))).))))((((.....))))....(((((......................))))).))))))))))..)))).)))).))).))))
......))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCGCCCACCTTATCATTCTCAACATCATCATCTTCATCTTCATCATCACTAGCAGCCTGTCTGCTATAAGTAACAGCGGAATTCCCAGGATTTGTCCGCT
TTAATTCATTAATCGATTCGAAACTACCTTCCGTACATTCCTCGTGCATAATCATCATCTTTTCGGCTACCTCCTCGATGCTTCCATCTCCGACCTCGGT
ATTGAAATCCGAAAGCATGAATTCGTCAAGAATTTCCTCTAAATCATCAATATATACCTGTTCCTTAGATTGAGTGAAGAATGAGAAGATGCGTTCAGAA
AGCTCTTGGGATTT
dot-bracket secondary structure
...((((........((((.(((..((((.((((..(((((((..(((.((((((.....))))))(((.(((.((((((..((....))....))))))
))).....)))...((((.(((......))).((((.......))))..)))).((((.(((((((........((((((((...............)))
)))))...))))))).))))((((.....))))....(((((......................))))).))))))))))..)))).)))).))).))))
......))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q3KRG3|TSR2_DANRE: 0.0001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
